pandemia.components.health_model.safir_health_model

Safir health model

Module Contents

Classes

SafirHealthModel

A version of the Safir health model.

Attributes

log

pandemia.components.health_model.safir_health_model.log

class pandemia.components.health_model.safir_health_model.SafirHealthModel(config, scale_factor, clock)

Bases: pandemia.components.health_model.HealthModel

A version of the Safir health model.

To see the Safir3 model, follow the link: https://github.com/mrc-ide/safir3.

Parameters:

configConfig

A Pandemia Config object. A sub-config of the full config, containing the data used to configure this component.

clockClock

A Pandemia Clock object, discretizing the day.

scale_factorfloat

The scale factor, coming from the full config.

vectorize_component(vector_region)

Initializes vector region numpy arrays related to this component

initial_conditions(vector_region)

Updates health functions

update(vector_region, t)

Updates health functions

dynamics(vector_region, t)

Changes to agent health